Whirly

Description

Desveaux et al. (2002): The single-stranded DNA (ssDNA) binding subunit of the plant transcription factor p24 is representative of a novel family of ubiquitous plant-specific proteins that we refer to as the Whirly family because of their quaternary structure.

References:


1) Lang, D; Weiche, B; Timmerhaus, G; Richardt, S; Riano-Pachon, DM; Correa, LG; Reski, R; Mueller-Roeber, B; Rensing, SA. 2010. Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol. 2: 488-503 PubMed
2) Desveaux, D; Allard, J; Brisson, N; Sygusch, J. 2002. A new family of plant transcription factors displays a novel ssDNA-binding surface. Nat Struct Biol. 9(7):512-7 PubMed


Summary

Name: Whirly
Class: TF
Number of species containing the TAP: 108
Number of available proteins: 239

The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules:


(Domain names are clickable)


Phylogenetic tree for Archeaplastida:

To view the tree click here.



TAP distribution:

The following table shows the distribution of Whirly over all species included in TAPscan. The values for e.g. a specific kingdom are shown in the tree below if you expand the tree for that kingdom.

Minimum Maximum Average Median Standard deviation
09221.43

List of species containing Whirly sorted by kingdomcladesupergrouporderfamily:

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expand kingdom Archaeplastida (246 proteins in 108 species)
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A list of species letter codes included in the protein names can be found here (opens in new tab).


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