Zinc finger, MIZ type

Description

PFAM: The MIZ-type zinc finger domain is a sequence specific DNA binding domain that is part of proteins like Miz1 that can function as a positive-acting transcription factor. The name MIZ is derived from Msx-interacting-zinc finger.

References:


Lang, D; Weiche, B; Timmerhaus, G; Richardt, S; Riano-Pachon, DM; Correa, LG; Reski, R; Mueller-Roeber, B; Rensing, SA. 2010. Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol. 2: 488-503 PubMed


Summary

Name: Zinc finger, MIZ type
Class: TF
Number of species containing the TAP: 113
Number of available proteins: 391

The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules:


(Domain names are clickable)


Phylogenetic tree for Archeaplastida:

To view the tree click here.



TAP distribution:

The following table shows the distribution of Zinc finger, MIZ type over all species included in TAPscan. The values for e.g. a specific kingdom are shown in the tree below if you expand the tree for that kingdom.

Minimum Maximum Average Median Standard deviation
0213.3133.01

List of species containing Zinc finger, MIZ type sorted by kingdomcladesupergrouporderfamily:

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expand kingdom Archaeplastida (407 proteins in 113 species)
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A list of species letter codes included in the protein names can be found here (opens in new tab).


Impressum