C2C2_CO-like

Description

Lagercrantz & Axelsson (2000): A family of CONSTANS LIKE genes (COLs) has recently been identified in Arabidopsis thaliana and other plant species. CONSTANS, the first isolated member, is a putative zinc finger transcription factor that promotes the induction of flowering in A. thaliana in long photoperiods.

References:


1) Lagercrantz, U; Axelsson, T. 2000. Rapid evolution of the family of CONSTANS LIKE genes in plants. Mol. Biol. Evol. 17(10):1499-507 PubMed
2) Lang, D; Weiche, B; Timmerhaus, G; Richardt, S; Riano-Pachon, DM; Correa, LG; Reski, R; Mueller-Roeber, B; Rensing, SA. 2010. Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol. 2: 488-503 PubMed


Summary

Name: C2C2_CO-like
Class: TF
Number of species containing the TAP: 105
Number of available proteins: 834

The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules:


(Domain names are clickable)


Phylogenetic tree for Archeaplastida:

To view the tree click here.



TAP distribution:

The following table shows the distribution of C2C2_CO-like over all species included in TAPscan. The values for e.g. a specific kingdom are shown in the tree below if you expand the tree for that kingdom.

Minimum Maximum Average Median Standard deviation
0367.1375.96

List of species containing C2C2_CO-like sorted by kingdomcladesupergrouporderfamily:

hide all | show all

expand kingdom Archaeplastida (848 proteins in 105 species)
select all | unselect | select genome only

A list of species letter codes included in the protein names can be found here (opens in new tab).


Impressum