DUF296 domain containing

Description

Richardt et al. (2007): This domain has been implicated in transcriptional regulation based on annotation of domain and/or family members.

PFAM: This putative domain is found in proteins that contain AT-hook motifs PF02178 which strongly suggests a DNA-binding function for the proteins as a whole.

References:


1) Lang, D; Weiche, B; Timmerhaus, G; Richardt, S; Riano-Pachon, DM; Correa, LG; Reski, R; Mueller-Roeber, B; Rensing, SA. 2010. Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol. 2: 488-503 PubMed
2) Richardt, S; Lang, D; Reski, R; Frank, W; Rensing, SA. 2007. PlanTAPDB, a Phylogeny-Based Resource of Plant Transcription-Associated Proteins. Plant Physiol. 143(4): 1452–1466 PubMed PubMed


Summary

Name: DUF296 domain containing
Class: PT
Number of species containing the TAP: 101
Number of available proteins: 2938

The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules:


(Domain names are clickable)


Phylogenetic tree for Archeaplastida:

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TAP distribution:

The following table shows the distribution of DUF296 domain containing over all species included in TAPscan. The values for e.g. a specific kingdom are shown in the tree below if you expand the tree for that kingdom.

Minimum Maximum Average Median Standard deviation
010124.992520.23

List of species containing DUF296 domain containing sorted by kingdomcladesupergrouporderfamily:

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expand kingdom Archaeplastida (2974 proteins in 101 species)