Pseudo ARR-B

Description

Tajima et al. (2004): In Arabidopsis thaliana, a Histidine-to-Aspartate (His-->Asp) phosphorelay is involved in the signal transduction for propagation of certain stimuli, such as plant hormones. Through the phosphorelay, the type-B phospho-accepting response regulator (ARR) family members serve as DNA-binding transcriptional regulators, whose activities are most likely regulated by phosphorylation/dephosphorylation.

References:


1) Aoyama, T; Oka, A. 2003. Cytokinin signal transduction in plant cells. J. Plant Res. 116(3):221-31 PubMed
2) D'Agostino, IB; Kieber, JJ. 1999. Phosphorelay signal transduction: the emerging family of plant response regulators. Trends Biochem. Sci. 24(11):452-6 PubMed
3) Kakimoto, T. 2003. Perception and signal transduction of cytokinins. Annu Rev Plant Biol 54:605-27 PubMed
4) Kolmos, E; Schoof, H; Plümer, M; Davis, SJ. 2008. Structural insights into the function of the core-circadian factor TIMING OF CAB2 EXPRESSION 1 (TOC1). J Circadian Rhythms 6:3 PubMed
5) Lang, D; Weiche, B; Timmerhaus, G; Richardt, S; Riano-Pachon, DM; Correa, LG; Reski, R; Mueller-Roeber, B; Rensing, SA. 2010. Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol. 2: 488-503 PubMed
6) Tajima, Y; Imamura, A; Kiba, T; Amano, Y; Yamashino, T; Mizuno, T. 2004. Comparative studies on the type-B response regulators revealing their distinctive properties in the His-to-Asp phosphorelay signal transduction of Arabidopsis thaliana. Plant Cell Physiol. 45(1):28-39 PubMed


Summary

Name: Pseudo ARR-B
Class: TF
Number of species containing the TAP: 102
Number of available proteins: 478

The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules:


(Domain names are clickable)


Phylogenetic tree for Archeaplastida:

To view the tree click here.



TAP distribution:

The following table shows the distribution of Pseudo ARR-B over all species included in TAPscan. The values for e.g. a specific kingdom are shown in the tree below if you expand the tree for that kingdom.

Minimum Maximum Average Median Standard deviation
0174.0843.21

List of species containing Pseudo ARR-B sorted by kingdomcladesupergrouporderfamily:

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expand kingdom Archaeplastida (485 proteins in 102 species)
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A list of species letter codes included in the protein names can be found here (opens in new tab).


Impressum