S1Fa-like

Description

Zhou et al. (1995): A cDNA encoding a specific binding activity for the tissue-specific negative cis-element S1F binding site of spinach rps1 was isolated from a spinach cDNA expression library. This cDNA of 0.7 kb encodes an unusual small peptide of only 70 amino acids, with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. This protein, named S1Fa, is highly conserved between dicotyledonous and monocotyledonous plants and may represent a novel class of DNA binding proteins. The corresponding mRNA is accumulated more in roots and in etiolated seedlings than in green leaves. This expression pattern is correlated with the tissue-specific function of the S1F binding site which represses the rps1 promoter preferentially in roots and in etiolated plants.

References:


Zhou, DX; Bisanz-Seyer, C; Mache, R. 1995. Molecular cloning of a small DNA binding protein with specificity for a tissue-specific negative element within the rps1 promoter. Nucleic Acids Res. 23(7):1165-9 PubMed


Summary

Name: S1Fa-like
Class: TF
Number of species containing the TAP: 92
Number of available proteins: 183

The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules:


(Domain names are clickable)


Phylogenetic tree for Archeaplastida:

To view the tree click here.



TAP distribution:

The following table shows the distribution of S1Fa-like over all species included in TAPscan. The values for e.g. a specific kingdom are shown in the tree below if you expand the tree for that kingdom.

Minimum Maximum Average Median Standard deviation
071.5411.47

List of species containing S1Fa-like sorted by kingdomcladesupergrouporderfamily:

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expand kingdom Archaeplastida (190 proteins in 92 species)
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A list of species letter codes included in the protein names can be found here (opens in new tab).


Impressum